This function reads GSEA results from RDS files for multiple comparisons and collections.
Usage
read_gsea_rds(
group_dir = getwd(),
collection = c("HALLMARK", "GOBP", "KEGG", "REACTOME", "BIOCARTA", "TFT")
)
Arguments
- group_dir
Parent directory containing comparison subdirectories. Default is current working directory
- collection
Vector of gene set collections to load. Default includes HALLMARK, GOBP, KEGG, REACTOME, BIOCARTA, and TFT
Value
A list of GSEA objects for each comparison
Examples
if (FALSE) { # \dontrun{
# Read all default collections
gsea_results <- read_gsea_rds("results")
# Read specific collections
gsea_results <- read_gsea_rds("results", collection = c("HALLMARK", "KEGG"))
} # }