Generate MA Plot

This function creates a MA plot to visualize differential expression results. It shows the relationship between mean expression and log2 fold change for each gene.

Usage

plot_ma(res, fc.thresh = 0.5, save_plot = TRUE, save_dir = getwd())

Arguments

res

Differential expression result data frame from run_diffexp()

save_plot

Logical. If TRUE, saves the plot to PDF. Default is TRUE

save_dir

Directory to save the plot. Default is current working directory

Value

A ggplot object showing the MA plot

Examples

if (FALSE) { # \dontrun{
# Basic MA plot
p <- plot_ma(res)
} # }