Plot GSEA Results

This function creates a barplot to visualize GSEA results, showing the most significant gene sets in each direction (up and down-regulated).

Usage

plot_gsea_barplot(gsea, n = 10, signif = F, save_plot = T, save_dir = getwd())

Arguments

gsea

GSEA result data frame from run_gsea()

n

Number of top gene sets to show in each direction. Default is 10

signif

Logical. If TRUE, only shows gene sets with q-value < 0.05. Default is TRUE

save_plot

Logical. If TRUE, saves the plot to PDF. Default is TRUE

save_dir

Directory to save the plot. Default is current working directory

Value

A ggplot object showing the GSEA barplot

Examples

if (FALSE) { # \dontrun{
# Basic GSEA plot
p <- plot_gsea_barplot(gsea_results)

# GSEA plot with more gene sets and only significant results
p <- plot_gsea_barplot(gsea_results, n = 15, signif = TRUE)
} # }